{ "_id": "6ad1ec5729625c14e47af0a0", "Package": "ascent", "Title": "Multi-Layer Decomposition of Functional Community Restructuring", "Version": "0.5.0", "Authors@R": "c(\nperson(\"Rogelio R.\", \"Muñoz-Li\", email = \"munozrogelio16@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Flavia\", \"Alvarez-Denis\", role = \"aut\")\n)", "Description": "Implements the 'ASC-CFD' (Assemblage Shift\nCharacterization - Community Functional Dynamics) framework for\ndecomposing functional community restructuring into positional\n(centroid displacement), dispersive (functional dispersion),\nand boundary (convex hull volume) components. Tests each\ncomponent against two null models: a sampling null model\n(individuals or replicates reassigned between communities) and\na stratified trait-permutation null model, with a single global\ntest when many communities are compared. Functional entities\n(species with similar traits) help detect replacement among\nsimilar species, and species-level leverage identifies the taxa\ndriving functional shifts. Supports both temporal (paired) and\nspatial (pairwise) comparisons.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "URL": "https://github.com/V3ndetta96/ascent", "BugReports": "https://github.com/V3ndetta96/ascent/issues", "VignetteBuilder": "knitr", "Repository": "https://v3ndetta96.r-universe.dev", "Date/Publication": "2026-10-16 03:45:29 UTC", "RemoteUrl": "https://github.com/v3ndetta96/ascent", "RemoteRef": "HEAD", "RemoteSha": "48319b9de862f2608eeb035f5666fc716324d74f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-16 08:17:25 UTC", "User": "root" }, "Author": "Rogelio R. Muñoz-Li [aut, cre],\nFlavia Alvarez-Denis [aut]", "Maintainer": "Rogelio R. Muñoz-Li ", "_user": "v3ndetta96", "_type": "src", "_file": "ascent_0.5.0.tar.gz", "_fileid": "https://r2.ropensci.org/204195bb26c6978be774d259f99b6ec4c1883058d4286bff52e9a6324225565d", "_filesize": 606894, "_sha256": "204195bb26c6978be774d259f99b6ec4c1883058d4286bff52e9a6324225565d", "_expires": "2027-01-24T09:20:20.000Z", "_created": "2026-10-16T08:17:25.000Z", "_published": "2026-10-16T09:20:22.934Z", "_buildurl": "https://github.com/r-universe/v3ndetta96/actions/runs/38872371660", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 116880446511, "time": 136, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12033891957" }, { "job": 116880446572, "time": 126, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12033334326" }, { "job": 116880446600, "time": 153, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12036847503" }, { "job": 116880446579, "time": 206, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12036642694" }, { "job": 116879384424, "time": 174, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12034570083" }, { "job": 116880446681, "time": 104, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12033209774" }, { "job": 116880446670, "time": 82, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12034695395" }, { "job": 116880446626, "time": 79, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12033986061" }, { "job": 116880446714, "time": 76, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12034247068" } ], "_upstream": "https://github.com/v3ndetta96/ascent", "_commit": { "id": "48319b9de862f2608eeb035f5666fc716324d74f", "author": "V3ndetta96 ", "committer": "V3ndetta96 ", "message": "Version 0.5.0\n\nNumbered 0.5.0 instead of 0.2.0 because versions 0.2.0 to 0.4.0 already exist as early development snapshots on GitHub tags and Zenodo. NEWS and cran-comments explain the jump from 0.1.1.\n", "time": 1792122329 }, "_maintainer": { "name": "Rogelio R. Muñoz-Li", "email": "munozrogelio16@gmail.com", "login": "v3ndetta96", "description": "Cryptocurrencies trading bots & Blockchain's dev", "uuid": 81817650 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "cluster", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "geometry", "role": "Imports" }, { "package": "withr", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "patchwork", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "v3ndetta96", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-22", "n": 8 }, { "week": "2026-24", "n": 4 }, { "week": "2026-28", "n": 1 }, { "week": "2026-30", "n": 1 }, { "week": "2026-42", "n": 8 } ], "_tags": [ { "name": "v0.1.0", "date": "2026-05-26" }, { "name": "v0.2.0", "date": "2026-05-27" }, { "name": "v0.3.0", "date": "2026-05-31" }, { "name": "0.4.0", "date": "2026-06-09" } ], "_stars": 1, "_contributors": [ { "user": "v3ndetta96", "count": 24, "uuid": 81817650 } ], "_userbio": { "uuid": 81817650, "type": "user", "name": "Mighi", "followers": 0, "description": "Cryptocurrencies trading bots & Blockchain's dev" }, "_downloads": { "count": 302, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ascent" }, "_devurl": "https://github.com/v3ndetta96/ascent", "_searchresults": 6, "_rbuild": "4.6.1", "_assets": [ "extra/ascent.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/v3ndetta96/ascent", "_realowner": "v3ndetta96", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2026-07-30" } ], "_exports": [ "asc_baseline", "asc_entities", "asc_null", "asc_paired", "asc_pairwise", "asc_transitions", "assess_functional_space" ], "_datasets": [ { "name": "birds_sim", "title": "Simulated Bird Communities", "object": "birds_sim", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "asc_baseline", "title": "Baseline Functional Topology of Entities", "topics": [ "asc_baseline" ] }, { "page": "asc_entities", "title": "Identify Functional Entities (Species Clustering)", "topics": [ "asc_entities" ] }, { "page": "asc_null", "title": "Null Models for Multi-Layer Functional Shifts", "topics": [ "asc_null" ] }, { "page": "asc_paired", "title": "Paired Functional Multidimensional Restructuring", "topics": [ "asc_paired" ] }, { "page": "asc_pairwise", "title": "Pairwise Functional Spatial Divergence", "topics": [ "asc_pairwise" ] }, { "page": "asc_transitions", "title": "Functional Transitions: Species Leverage, Partition and Entities", "topics": [ "asc_transitions" ] }, { "page": "assess_functional_space", "title": "Assess Functional Space Quality", "topics": [ "assess_functional_space" ] }, { "page": "birds_sim", "title": "Simulated Bird Communities", "topics": [ "birds_sim" ] }, { "page": "plot.ascfcd", "title": "Plot Multidimensional Functional Restructuring", "topics": [ "plot.ascfcd" ] }, { "page": "plot.ascfcd_entities", "title": "Plot Functional Entities Dendrogram", "topics": [ "plot.ascfcd_entities" ] }, { "page": "plot.ascfcd_pw", "title": "Plot Pairwise Functional Spatial Divergence", "topics": [ "plot.ascfcd_pw" ] }, { "page": "plot.ascfcd_transitions", "title": "Plot Functional Leverage", "topics": [ "plot.ascfcd_transitions" ] }, { "page": "summary.ascfcd", "title": "Summary for Paired Functional Centroid Displacement", "topics": [ "summary.ascfcd" ] }, { "page": "summary.ascfcd_base", "title": "Summary for Baseline Functional Entities", "topics": [ "summary.ascfcd_base" ] }, { "page": "summary.ascfcd_entities", "title": "Summary for Functional Entities Classification", "topics": [ "summary.ascfcd_entities" ] }, { "page": "summary.ascfcd_pw", "title": "Summary for Pairwise Functional Spatial Divergence", "topics": [ "summary.ascfcd_pw" ] }, { "page": "summary.ascfcd_transitions", "title": "Summary for Functional Transitions", "topics": [ "summary.ascfcd_transitions" ] } ], "_readme": "https://github.com/v3ndetta96/ascent/raw/HEAD/README.md", "_rundeps": [ "abind", "cli", "cluster", "cpp11", "farver", "geometry", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "linprog", "lpSolve", "magic", "R6", "RColorBrewer", "Rcpp", "RcppProgress", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "ascent_tutorial.Rmd", "filename": "ascent_tutorial.html", "title": "ascent: decomposing functional community restructuring", "author": "Rogelio R. Muñoz-Li & Flavia Alvarez-Denis", "engine": "knitr::rmarkdown", "headings": [ "Part I - Conceptual Framework", "The simulated data", "Part II - Quality of the functional space", "Part III - Paired contrasts", "Part IV - Which species moved the community?", "Part V - Functional entities", "Part VI - Many communities: a global test", "Part VII - Baseline topology", "Part VIII - Methodological notes", "Choosing stratum_size", "Known limits of the null models", "Interpreting FRic", "Normalisation", "Leverage: additive decomposition" ], "created": "2026-05-31 22:49:37", "modified": "2026-10-14 01:58:22", "commits": 7 } ], "_score": 4.3979400086720375, "_indexed": true, "_nocasepkg": "ascent", "_universes": [ "v3ndetta96" ], "_previous": "0.1.1", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.5.0", "date": "2026-10-16T08:19:36.000Z", "distro": "resolute", "commit": "48319b9de862f2608eeb035f5666fc716324d74f", "fileid": "https://r2.ropensci.org/fdbcd86ef7a7dede62c7bdfd93652da7e7628c3d59181b34bbd61d4d3aa5304a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/v3ndetta96/actions/runs/38872371660" }, { "r": "4.6.1", "os": "linux", "version": "0.5.0", "date": "2026-10-16T08:19:29.000Z", "distro": "resolute", "commit": "48319b9de862f2608eeb035f5666fc716324d74f", "fileid": "https://r2.ropensci.org/ee0d05beca36555369694590775aebdac83f927850c3a0f35a354251eaf740ae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/v3ndetta96/actions/runs/38872371660" }, { "r": "4.5.3", "os": "mac", "version": "0.5.0", "date": "2026-10-16T09:18:42.000Z", "commit": "48319b9de862f2608eeb035f5666fc716324d74f", "fileid": "https://r2.ropensci.org/55708f83fbd6e7ef764b61821567389b091f42c249f117d19197efd38de0faa9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/v3ndetta96/actions/runs/38872371660" }, { "r": "4.6.1", "os": "mac", "version": "0.5.0", "date": "2026-10-16T09:16:21.000Z", "commit": "48319b9de862f2608eeb035f5666fc716324d74f", "fileid": "https://r2.ropensci.org/f1d83099b3554c11ad2e177489bf8104a2e6c84485775a721469515fc8f6e5ad", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/v3ndetta96/actions/runs/38872371660" }, { "r": "4.6.0", "os": "wasm", "version": "0.5.0", "date": "2026-10-16T08:19:30.000Z", "commit": "48319b9de862f2608eeb035f5666fc716324d74f", "fileid": "https://r2.ropensci.org/74cc846d8cbd99911a8cb8aad1e77c92a466a9fb78e3e55abb8b4bab0f79f7df", "status": "success", "buildurl": "https://github.com/r-universe/v3ndetta96/actions/runs/38872371660" }, { "r": "4.7.0", "os": "win", "version": "0.5.0", "date": "2026-10-16T08:18:47.000Z", "commit": "48319b9de862f2608eeb035f5666fc716324d74f", "fileid": "https://r2.ropensci.org/f459d8cd2611b474741cf84c7537e968f6c447c017efbaeea4590b8d0d69108d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/v3ndetta96/actions/runs/38872371660" }, { "r": "4.5.3", "os": "win", "version": "0.5.0", "date": "2026-10-16T08:18:35.000Z", "commit": "48319b9de862f2608eeb035f5666fc716324d74f", "fileid": "https://r2.ropensci.org/ba5d249774c6433c69cea7f85d2eb330372dc988fe4bfc7bcb7225c0284f820b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/v3ndetta96/actions/runs/38872371660" }, { "r": "4.6.1", "os": "win", "version": "0.5.0", "date": "2026-10-16T08:18:35.000Z", "commit": "48319b9de862f2608eeb035f5666fc716324d74f", "fileid": "https://r2.ropensci.org/90ac2dc0b9488d751d1d7644bec9cafd2baa56dd22d8fad6a85ec6cd5ab26624", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/v3ndetta96/actions/runs/38872371660" } ] }